Phylogenetic Network Software to compute phylogenetic networks
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- This list of phylogenetics software is a compilation of computational phylogenetics software used to produce phylogenetic trees. Such tools are commonly...
- networks from genetic, linguistic, and other data. Phylogeny programs, some of which compute phylogenetic networks List of programs for phylogenetic network...
of phylogenetic tree viewing software is a compilation of software tools and web portals used in visualizing phylogenetic trees. 1 "All" refers to Microsoft...- genomes spreading through different contact network structures, such as chains, homogenous networks, or networks with super-spreaders, would accumulate mutations...
- single phylogenetic tree, indicating common ancestry. Phylogenetics is the study of phylogenetic trees. The main challenge is to find a phylogenetic tree...
In phylogenetics, reconciliation is an approach to connect the history of two or more coevolving biological entities. The general idea of reconciliation...- parameters. Both rooted and unrooted phylogenetic trees can be further generalized to rooted or unrooted phylogenetic networks, which allow for the modeling...
- Bayesian network could represent the probabilistic relationships between diseases and symptoms. Given symptoms, the network can be used to compute the probabilities...
- Phylogenetic autocorrelation also known as Galton's problem, after Sir Francis Galton who described it, is the problem of drawing inferences from cross-cultural...
Graph drawing (redirect from Graph software)Cytoscape, open-source software for visualizing molecular interaction networks Gephi, open-source network analysis and visualization software graph-tool, a free/libre...
SplitsTree (category Phylogenetics software)neighbor-net, consensus networks, super networks methods or methods for computing hybridization or simple recombination networks. It uses the NEXUS file...- drawing tool. Molecular evolution, phylogenetics and epidemiology. Retrieved from http://tree.bio.ed.ac.uk/software/figtree/. Kent, W. J., Sugnet, C. W...
unique-ID project. GARUDA, India's National Grid Computing Initiative TaxoGrid, a grid-based molecular phylogenetics and drug discovery system GIST, Graphics...- applicable to online social networks and communication networks (mobile phone). Participants of the European career-oriented online social network XING who...
- Quantitative comparative linguistics (category Phylogenetics)history as distinct from the "explicit" representation of phylogenetic networks. In a splits network the phrenetic distance is that of the shortest path between...
- T-REX (web server) (category Phylogenetics software)dedicated to the inference, validation and visualization of phylogenetic trees and phylogenetic networks. The T-REX web server allows the users to perform...
- Distance matrices in phylogeny (category Computational phylogenetics)methods will probably stay in the mainstream for a long time to come. List of phylogenetics software Mount DM. (2004). Bioinformatics: Sequence and Genome Analysis...
Bioinformatics (redirect from Introduction to bioinformatics)database. Network analysis seeks to understand the relationships within biological networks such as metabolic or protein–protein interaction networks. Although...- Robinson–Foulds metric (category Computational phylogenetics)shown to approximate the Robinson-Foulds distance with a bounded error in sublinear time. In phylogenetics, the metric is often used to compute a distance...
- model. A phylogenetic convolutional neural network (Ph-CNN) is a convolutional neural network architecture proposed by Fioranti et al. in 2018 to classify...
- [11] Phylogenetic profile describes the presence or absence of a protein in a particular organism whose genome has been sequenced. Phylogenetic profiles